PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0033ss00800.1
Common NameLR48_Vigan01g121800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family YABBY
Protein Properties Length: 290aa    MW: 31718 Da    PI: 6.692
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0033ss00800.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY203.86.8e-6361652168
              YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnveke 89 
                        ++f+ +eq+Cyv+C+fC+til+vsvP +sl++vvtvrCGhCtsllsvn++k+s    ql+a+ sh        +  +++++e+    ++ k+
  Vang0033ss00800.1   6 HLFDLPEQICYVECGFCTTILMVSVPCSSLSTVVTVRCGHCTSLLSVNMNKTSfvpfQLRASLSH--------VEPNEGSSEDGAACKTLKN 89 
                        7899**********************************************998444444444444........6666666665555555544 PP

              YABBY  90 esastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168
                         s+s  +     s+ e+e++p++   v++PPekrqr Psayn+fikeei+r+ka+nP+++hreafs+aaknWa fP+ h 
  Vang0033ss00800.1  90 YSSSVVTY----SDCEEENTPQTSSvVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPKMAHREAFSTAAKNWANFPPSHC 165
                        44443333....3445555555554499*************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.4E-6211165IPR006780YABBY protein
SuperFamilySSF470952.62E-9107163IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.4E-5113163IPR009071High mobility group box domain
CDDcd000844.32E-4121164No hitNo description
Gene3DG3DSA:1.20.140.403.8E-6204272IPR006501Pectinesterase inhibitor domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0043086Biological Processnegative regulation of catalytic activity
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0004857Molecular Functionenzyme inhibitor activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSTLNHLFDL PEQICYVECG FCTTILMVSV PCSSLSTVVT VRCGHCTSLL SVNMNKTSFV  60
PFQLRASLSH VEPNEGSSED GAACKTLKNY SSSVVTYSDC EEENTPQTSS VVNKPPEKRQ  120
RTPSAYNCFI KEEIKRLKAE NPKMAHREAF STAAKNWANF PPSHCKGEAD SCKILHLDCH  180
VESPNASQVT TLKIFNFSTI SSLLESNITD PELLFKLSLR VAIDELSKLS NFPSKLRANA  240
EHDARLQKAI NVYSSVIGDA LDRLNDSISA LGTVTGRIVS STSVNNVEM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-171AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153748.11e-113hypothetical protein PHAVU_003G061800g
SwissprotQ9LDT33e-68YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A0L9TM390.0A0A0L9TM39_PHAAN; Uncharacterized protein
STRINGGLYMA18G19720.26e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61442852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.12e-69YABBY family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]